Wl,-export-dynamic -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/R/lib -lR -lpcre -llzma -lbz2 -lz -lrt -ldl -lmĬommand "python setup.py egg_info" failed with error code 1 in /tmp/pip-build-EkrbmM/rpy2/Ĭollecting unroll Using cached unroll-0.1.0.tar.gzįile "/tmp/pip-build-QimGjp/unroll/setup.py", line 2, inįile "/usr/local/lib/python2.7/dist-packages/ez_setup.py", line 145, in use_setuptools Rc = om_string(rconfig, allow_empty = allow_empty)įile "/tmp/pip-build-EkrbmM/rpy2/setup.py", line 279, in from_string )],įile "/usr/lib/python2.7/distutils/core.py", line 151, in setupįile "/usr/lib/python2.7/distutils/dist.py", line 953, in run_commandsįile "/usr/lib/python2.7/distutils/dist.py", line 972, in run_commandįile "/usr/local/lib/python2.7/dist-packages/setuptools/command/egg_info.py",įile "/usr/local/lib/python2.7/dist-packages/setuptools/command/p圓6compat.py",īuild_ext = self.get_finalized_command('build_ext')įile "/usr/lib/python2.7/distutils/cmd.py", line 312, in get_finalized_commandįile "/usr/lib/python2.7/distutils/cmd.py", line 109, in ensure_finalizedįile "/tmp/pip-build-EkrbmM/rpy2/setup.py", line 155, in finalize_optionsįile "/tmp/pip-build-EkrbmM/rpy2/setup.py", line 319, in get_rconfig Writing manifest file 'pip-egg-info/rpy2.egg-info/SOURCES.txt'įile "/tmp/pip-build-EkrbmM/rpy2/setup.py", line 462, in Writing dependency_links to pip-egg-info/rpy2.egg-info/dependency_links.txt Writing top-level names to pip-egg-info/rpy2.egg-info/top_level.txt Writing pip-egg-info/rpy2.egg-info/PKG-INFO
rwxr-xr-x 1 root root 204 Nov 8 16:24 /usr/local/bin/pipįull error output pip install rpy2=2.2.7Ĭollecting rpy2=2.2.7 Using cached rpy2-2.2.7.tar.gzĬomplete output from command python setup.py egg_info: Pip 8.1.1 from /usr/lib/python2.7/dist-packages (python 2.7)
Pip 9.0.1 from /home/matifou/.local/lib/python2.7/site-packages (python 2.7) Someone suggested I might have a weird python/pip installation, here are a few infos: sudo which python pip pip2 | xargs -rd '\n' readlink -f I tried solutions in this post, like: pip install -upgrade setuptools, (sudo) easy_install -U setuptools, or sudo apt-get install python-setuptools, but to no avail. I thought this post was the same issue, but there it gets resolved by using sudo. The same thing happens with other packages, like pip install unroll, or using pip2. I am trying to install python package rpy2 with pip install on Ubuntu 16.04: pip install rpy2=2.2.7īut get error message (see full output below): Command "python setup.py egg_info" failed with error code 1 in /tmp/pip-build-EuOI6K/unroll/
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